DreEX6099412 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26321616-26322232:-
Coord C1 exon
chr22:26322064-26322232
Coord A exon
chr22:26321768-26321851
Coord C2 exon
chr22:26321616-26321701
Length
84 bp
Sequences
Splice sites
3' ss Seq
CACTCTATTTTTATCTGTAGATC
3' ss Score
9.56
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGAACGGCTGTTATGAAGCCCTGTCTGGAGGATCCACTAGCGAGGGTTTTGAGGACTTCACTGGAGGCATCGCTGAGAGCTACGAGATCAGAAAAGCACCGACCAATTTGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGAGCTTTGCTGGGCTGCTCCATCGAC
Seq A exon
ATCACAAGTGCTGCTGATTCAGAAGCCATCACTCGTCAGAAGCTGGTCAAAGGCCACGCCTACTCACTCACAGGGGCAACAGAG
Seq C2 exon
GTGAACTATCGTGGTCGCAAGGAAAAGCTGGTTCGTATGCGCAACCCTTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'8-10,'8-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.8=100)
A:
PF0064816=Peptidase_C2=FE(9.1=100)
C2:
PF0064816=Peptidase_C2=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATCCACTAGCGAGGGTT
R:
GCGCATACGAACCAGCTTTTC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]