RnoEX0016706 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100900764-100902992:-
Coord C1 exon
chr13:100902824-100902992
Coord A exon
chr13:100901830-100901913
Coord C2 exon
chr13:100900764-100900849
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATTGTCCTTGCGTTTACAGATC
3' ss Score
11.08
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
GATCAATGGGTGCTATGAAGCACTCTCAGGGGGTGCCACCACTGAGGGCTTTGAAGACTTCACAGGAGGCATTGCCGAGTGGTATGAGCTGAGGAAGCCTCCTCCCAATTTGTTCAAGATCATCCAGAAGGCTTTGGAGAAAGGTTCTCTGCTTGGCTGCTCTATCGAT
Seq A exon
ATCACCAGCGCTGCGGATTCTGAGGCCGTTACGTACCAGAAGTTGGTGAAAGGACATGCGTACTCCGTCACTGGAGCCGAGGAG
Seq C2 exon
GTTGAAAGCTCAGGAAGCCTGCAGAAATTGATACGTATCAGGAACCCCTGGGGACAAGTGGAGTGGACCGGGAAGTGGAATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'9-10,'9-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGGTATGAGCTGAGGA
R:
TTGTCATTCCACTTCCCGGTC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]