MmuEX6029826 @ mm9
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184528793-184532245:+
Coord C1 exon
chr1:184528793-184528961
Coord A exon
chr1:184529673-184529756
Coord C2 exon
chr1:184532160-184532245
Length
84 bp
Sequences
Splice sites
3' ss Seq
GAACTTTCTTCTTGACACAGGTC
3' ss Score
7.36
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCTCAATGGTTCGTATGAGGCTCTTGCTGGAGGCTCCACAATTGAGGGGTTTGAGGATTTCACGGGTGGCATCTCTGAGTTTTATGACTTGAGGAAGCCTCCGGGCAATCTGTACTACACCATCCAGAAGGCCCTGCGCAAAGGCTCTCTGCTGGGCTGCTCCATTGAT
Seq A exon
GTCTCAAACGCAGCCGAAGCAGAAGCCACCACCAGGCAAAAGCTGGTTAAGGGCCACGCATACTCTGTGACTGGAGTCGAAGAG
Seq C2 exon
GTGGATTTCCGTGGCCTCCCAGAGAAGCTGATCAGGTTGAGGAACCCGTGGGGTGAAGTGGAGTGGACGGGAGCCTGGAGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTGGAGGCTCCACAATT
R:
TGATCAGCTTCTCTGGGAGGC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: