HsaEX6036921 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223622815-223627157:-
Coord C1 exon
chr1:223626989-223627157
Coord A exon
chr1:223625805-223625888
Coord C2 exon
chr1:223622815-223622900
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGACTTTCTTCTCTACGCAGGTC
3' ss Score
9.21
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCTTAATGGTTGTTATGAGGCTCTCGCTGGAGGTTCCACAGTGGAGGGGTTTGAGGATTTCACAGGTGGCATCTCTGAGTTTTATGACCTGAAGAAACCACCAGCCAATCTATATCAGATCATCCGGAAGGCCCTCTGTGCGGGGTCTCTGCTGGGCTGCTCCATTGAT
Seq A exon
GTCTCCAGTGCAGCCGAAGCCGAAGCCATCACCAGCCAGAAGCTGGTTAAGAGTCATGCGTACTCTGTCACTGGAGTCGAAGAG
Seq C2 exon
GTGAATTTCCAGGGCCATCCAGAGAAGCTGATCAGACTCAGGAATCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGCGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-'7-11,'7-8,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(16.2=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGTGGCATCTCTGAGT
R:
ACTCCACTTCACCCCATGGAT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains