GgaEX1012823 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18834620-18836408:+
Coord C1 exon
chr3:18834620-18834788
Coord A exon
chr3:18835601-18835684
Coord C2 exon
chr3:18836323-18836408
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTTCTTGCCTCAGATA
3' ss Score
7.72
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTGAATGGTTCTTATGAAGCTCTAGCTGGAGGGTCCACTATAGAGGGGTTTGAGGATTTTACTGGAGGCATCTCTGAATCCTATGACCTGCGGAGGGCTCCAGCAAACCTGTTCCAAATTGTCCAGAAGGCTCTGAGGGCTGGCTCACTGCTCGGCTGTTCCATTGAT
Seq A exon
ATAACTCGTGCATCTGAAACAGAAGCAATCACGAGTCTGAAGCTTGTGAAAGGACATGCTTATTCTGTCACTGGGGCAGAAGAG
Seq C2 exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.9=100)
A:
PF0064816=Peptidase_C2=FE(9.6=100)
C2:
PF0064816=Peptidase_C2=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTATGACCTGCGGAGGG
R:
TATCACTCCACGCTCCAGTCC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]