DreEX6066289 @ danRer10
Exon Skipping
Gene
ENSDARG00000010758 | capn12
Description
calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
Coordinates
chr18:36705907-36708661:+
Coord C1 exon
chr18:36705907-36706078
Coord A exon
chr18:36707916-36707999
Coord C2 exon
chr18:36708576-36708661
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTATTTTGTGTGCAGGCC
3' ss Score
7.89
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCTGATTGGTTCTTATGGCAGTCTAAAGGGCGGGATTATCTCAGAAGGAATGGAGGATTTTACAGGAGGAATTGCGTACTCTCTTCCGGTGTCTTCGCGACCCCCGCGCATGCTCTGGAAAGCCATCACCGCAGCCCTGGCCCGGAACAGCCTGCTAAGCTGCTTCATTCAT
Seq A exon
GCCACCACTGTGAAGGACATTGGCACTGTGACCCCAGAGGGTCTCATCAAAGGTCATGCCTATGCCATCACTGAAACAGGCAAG
Seq C2 exon
GTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010758-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.1=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGTACTCTCTTCCGGTGT
R:
AGGGTCCGCAGTACTCAACAA
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]