BtaEX6067945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27707649-27710537:-
Coord C1 exon
chr16:27710369-27710537
Coord A exon
chr16:27709335-27709418
Coord C2 exon
chr16:27707649-27707734
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTATTCTCAATTCAGATC
3' ss Score
8.69
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCTCAACGGTTCTTACGAGGCTCTCACTGGAGGGTCCACGGTGGAGGGGTTTGAGGATTTCACAGGTGGCATCTCTGAGTTTTATAACCTGAAGAAGCCACCGGCCAGTCTGTTCCAAATCATCCAGAAGGCCCTCCGCTCGGGGTCTCTGCTGGCCTGCTCCATTGAC
Seq A exon
ATCTCCAGTGCAGCCGAAACGGAAGCCATCACCAGCCAGAAGCTGGTTAAGGGTCACGCATACTCTGTCACAGGAGTTGAAGAG
Seq C2 exon
GTGGATTTCCGGGGCTGTCCTGAGAGGCTGATCAGACTCCGGAACCCGTGGGGCGAAGTGGAGTGGAAGGGGGCCTGGAGCGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'9-10,'9-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(9.0=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGAGGGGTTTGAGGATT
R:
CGGAGTCTGATCAGCCTCTCA
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]