GgaEX1012823 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17057180-17058968:+
Coord C1 exon
chr3:17057180-17057348
Coord A exon
chr3:17058161-17058244
Coord C2 exon
chr3:17058883-17058968
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTTCTTGCCTCAGATA
3' ss Score
7.72
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTGAATGGTTCTTATGAAGCTCTAGCTGGAGGGTCCACTATAGAGGGGTTTGAGGATTTTACTGGAGGCATCTCTGAATCCTATGACCTGCGGAGGGCTCCAGCAAACCTGTTCCAAATTGTCCAGAAGGCTCTGAGGGCTGGCTCACTGCTCGGCTGTTCCATTGAT
Seq A exon
ATAACTCGTGCATCTGAAACAGAAGCAATCACGAGTCTGAAGCTTGTGAAAGGACATGCTTATTCTGTCACTGGGGCAGAAGAG
Seq C2 exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'8-5,'8-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(20.0=100)
A:
PF0064816=Peptidase_C2=FE(10.0=100)
C2:
PF0064816=Peptidase_C2=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTATGACCTGCGGAGGG
R:
TATCACTCCACGCTCCAGTCC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]