GgaEX6029103 @ galGal3
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
NA
Coordinates
chr3:18806220-18807761:-
Coord C1 exon
chr3:18807601-18807761
Coord A exon
chr3:18807008-18807177
Coord C2 exon
chr3:18806220-18806231
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTCGTAAATCTGCTTCACAGACA
3' ss Score
5.62
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GATGGCCTTCAATGACTTCCTGAGGCACTACTCCCGCCTGGAAATCTGCAATCTGACTCCAGACACTCTGGCAAGTGACAGGTACAAGAAGTGGAGCCTGCTGAAGCTGGATGGGAACTGGCGGCGAGGAGCTACTGCGGGGGGCTGCAGGAATTACCCAA
Seq A exon
ACACTTTCTGGACGAATCCACAGTATTTAATCAAGCTGGAGGAAGAAGATGAGGATCCTGATGATCCTGAGGGGGGCTGCACATTTCTCATTGGCCTGATTCAGAAGCATCGGAGGAAGCAGAGGAAGATGGGAGAGGACATGCATACCATTGGCTTTGCAATTTATGAG
Seq C2 exon
GTGCCCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
A:
PF0106717=Calpain_III=FE(35.9=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]