RnoEX6045697 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100894508-100898451:-
Coord C1 exon
chr13:100898291-100898451
Coord A exon
chr13:100896139-100896308
Coord C2 exon
chr13:100894508-100894519
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTCTGACCTTGTTCCACAGATA
3' ss Score
10.31
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GATGTCCTTCAGTGACTTCCTGAGGCACTACTCTCGTCTAGAAATCTGCAACCTGACCCCGGACACCCTCACCTGTGACTCCTACAAGAAGTGGAAACTCACCAAGATGGATGGGAACTGGAGGCGAGGCTCCACTGCAGGGGGCTGCAGGAATTACCCAA
Seq A exon
ATACCTTCTGGATGAACCCTCAGTACCTAATCAAGCTGGAGGAAGAAGATGAAGATGATGAGGATGGGGAGAGGGGCTGTACCTTCCTGGTGGGCCTCATCCAGAAGCATCGGCGGCGGCAGAGGAAGATGGGTGAGGACATGCACACCATTGGCTTCGGCATCTATGAG
Seq C2 exon
GTCCCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'15-18,'15-16,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.4=43.6)
A:
PF0106717=Calpain_III=FE(35.9=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]