DreEX6099414 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26317068-26318542:-
Coord C1 exon
chr22:26318382-26318542
Coord A exon
chr22:26317204-26317367
Coord C2 exon
chr22:26317068-26317079
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTTCATTTAATGCTCTACAGACA
3' ss Score
5.26
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GATGGCATTCTCCGAATTCCTCACCAATTACTCTCGTATAGAGATCTGCACTCTGACGCCGGATGCCATCACAGATGATTCAGTAAAACATTGGGCCGTGACAAATCATGACGGCACATGGAGGAGAGGCTCCACCGCTGGAGGCTGCAGAAACAATCCAT
Seq A exon
ACACATTTTGGATGAATCCACAATTTGTGGTGAAACTGGATGAAGAAAATGTCGAAGATAAGGAGAAGGGCTGCAGTTTTGTAGTGGGTCTGATTCAGAAGAACCGCCGGCGCCTGAGGAAAACTGGAGAGGATATGAACACTATTGGCTTTGCTATTTATGAG
Seq C2 exon
CTCCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(15.6=43.6)
A:
PF0106717=Calpain_III=FE(35.1=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]