RnoEX6045712 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101018849-101025871:+
Coord C1 exon
chr13:101018849-101019009
Coord A exon
chr13:101021866-101022041
Coord C2 exon
chr13:101025860-101025871
Length
176 bp
Sequences
Splice sites
3' ss Seq
CATCACTGCACAACTTCCAGGCA
3' ss Score
4.43
5' ss Seq
CAGGTATCG
5' ss Score
9.18
Exon sequences
Seq C1 exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTACTCCCGACTGGAGATCTGCAACCTGTCCCCAGACTCTCTGAGCAGTGAAGAGATACACAAATGGAACCTAGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCTGAACTACCCAG
Seq A exon
GCACGTACTGGACCAACCCCCAGTTTAAAATCCATTTGGATGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACCGTGCTGCTGGGTCTGATGCAGAAGAATCGAAGACGTCAAAAGAGGATCGGCCAGGGCATGCTCAGCATAGGCTACGCTGTCTACCAG
Seq C2 exon
ATTCCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'5-13,'5-12,16-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(92.3=43.6)
A:
PF0106717=Calpain_III=FE(36.7=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]