GgaEX6029117 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18838840-18841847:+
Coord C1 exon
chr3:18838840-18839000
Coord A exon
chr3:18839712-18839887
Coord C2 exon
chr3:18841836-18841847
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTTGCGGATTTTTAGCAA
3' ss Score
5.13
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
Seq A exon
CAACATACTGGATCAATCCCCAGTTTAAAATCCGGCTGGATGAACCAGATGATGATCATGAAGGGAGTTTGAATGAGCCATGCTGTACTATATTGGTGGGCTTGATGCAGAAGAACCGCAGGAGACAGAAGAGAATGGGAGAAGGTCTGCTTAGTATTGGTTATTCACTCTATCAG
Seq C2 exon
ATTCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
A:
PF0106717=Calpain_III=FE(36.7=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]