HsaEX6036924 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223612246-223619453:-
Coord C1 exon
chr1:223619293-223619453
Coord A exon
chr1:223615970-223616145
Coord C2 exon
chr1:223612246-223612257
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATCACCTGGGTGACTTCCAGCCA
3' ss Score
3.89
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATGTCACTTTCAGATTTCGTGAGGCAGTTCTCTCGGTTGGAGATCTGCAACCTGTCCCCGGACTCTCTGAGTAGCGAGGAGGTGCACAAATGGAACCTGGTCCTGTTCAACGGCCACTGGACCCGGGGCTCCACAGCTGGGGGCTGCCAGAACTACCCAG
Seq A exon
CCACGTACTGGACCAATCCCCAGTTCAAAATCCGTTTGGATGAAGTGGATGAGGACCAGGAGGAGAGCATCGGTGAACCCTGCTGTACAGTGCTGCTGGGCCTGATGCAGAAAAATCGCAGGTGGCGGAAGCGGATAGGACAAGGCATGCTTAGCATCGGCTATGCCGTCTACCAG
Seq C2 exon
GTTCCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697-'24-22,'24-21,28-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
A:
PF0106717=Calpain_III=FE(36.7=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains