GgaEX6029117 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17061400-17064412:+
Coord C1 exon
chr3:17061400-17061560
Coord A exon
chr3:17062272-17062447
Coord C2 exon
chr3:17064401-17064412
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTTGCGGATTTTTAGCAA
3' ss Score
5.13
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
Seq A exon
CAACATACTGGATCAATCCCCAGTTTAAAATCCGGCTGGATGAACCAGATGATGATCATGAAGGGAGTTTGAATGAGCCATGCTGTACTATATTGGTGGGCTTGATGCAGAAGAACCGCAGGAGACAGAAGAGAATGGGAGAAGGTCTGCTTAGTATTGGTTATTCACTCTATCAG
Seq C2 exon
ATTCCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]