MmuEX6029823 @ mm10
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:182604440-182611100:+
Coord C1 exon
chr1:182604440-182604600
Coord A exon
chr1:182607594-182607769
Coord C2 exon
chr1:182611089-182611100
Length
176 bp
Sequences
Splice sites
3' ss Seq
CATCACTTCACGACTTCCAGCCA
3' ss Score
2.8
5' ss Seq
CAGGTATCG
5' ss Score
9.18
Exon sequences
Seq C1 exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTTCTCCCGACTAGAGATATGCAACCTGTCCCCAGACTCTCTGAGCAGTGAGGAGATACACAAATGGAACCTGGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCAGAACTACCCAG
Seq A exon
CCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGTCAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAG
Seq C2 exon
ATTCCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'4-23,'4-12,15-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
A:
PF0106717=Calpain_III=FE(36.7=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Main Skipping Isoform:
ENSMUST00000168514fB6995
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types