BtaEX6067949 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27696904-27704486:-
Coord C1 exon
chr16:27704326-27704486
Coord A exon
chr16:27701100-27701275
Coord C2 exon
chr16:27696904-27696915
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTGGGTGACTTCCAGCCA
3' ss Score
4.19
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GATGTCTTTTTCGGATTTCTTGAGGCAGTTCTCTCGGCTGGAGATCTGCAACCTGTCCCTGGACTCATTGAGCAGCGAGGAGGCGCACAAGTGGAGCCTGGTGCTGTTCAATGGGCGCTGGACTCGGGGCTCCACAGCTGGAGGCTGCCAGAACTACCCAG
Seq A exon
CCACTTACTGGACCAATCCCCAGTTCAAAATCCATTTGGACGAGGTGGATGATCACCAGGAGGAGGGCGTCAGTGAACCCTGCTGCACGGTACTGCTGGGGCTGATGCAGAAGAATCGCCGGCGACAGAAGAGGATGGGACAGGGCATGCTCAGCATCGGCTATGCTGTCTACAAG
Seq C2 exon
ATACCCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'13-16,'13-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
A:
PF0106717=Calpain_III=FE(36.7=100)
C2:
PF0106717=Calpain_III=FE(1.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]