GgaEX6029343 @ galGal3
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
NA
Coordinates
chr3:23490925-23501477:+
Coord C1 exon
chr3:23490925-23491048
Coord A exon
chr3:23491295-23491401
Coord C2 exon
chr3:23501349-23501477
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTACTTTGTTTGCAGTTT
3' ss Score
7.42
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATACTAATTTTGTCTTGGGCAATGCCCAGATAGTGGATTGGCCCATTGTGTACAGCAACGATGGATTTTGCAAGCTATCAGGATATCACAGAGCAGAAGTTATGCAAAAAAGCAGCACCTGCAG
Seq A exon
TTTTATGTATGGAGAGCTGACAGACAAAGATACAATTGACAAAGTCCGGCAGACATTTGAGAACTATGAGATGAATTCCTTTGAAATCCTGATGTACAAGAAGAACA
Seq C2 exon
GAACACCTGTCTGGTTCTTTGTGAAAATTGCTCCAATCCGAAATGAGCAGGATAAAGTGGTTTTATTTCTCTGCACTTTCAATGACATCACGGCTTTCAAGCAGCCCATTGAGGATGATTCATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(35.8=90.5)
A:
PF134261=PAS_9=FE(34.0=100)
C2:
PF134261=PAS_9=PD(29.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAATTTTGTCTTGGGCAATGC
R:
TGAATCATCCTCAATGGGCTGC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]