DreEX6099963 @ danRer10
Exon Skipping
Gene
ENSDARG00000023236 | kcnh1b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1b [Source:ZFIN;Acc:ZDB-GENE-121128-4]
Coordinates
chr22:37953850-37956454:+
Coord C1 exon
chr22:37953850-37953973
Coord A exon
chr22:37956136-37956242
Coord C2 exon
chr22:37956326-37956454
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCATGTGTGCTTCTTTCAGCTT
3' ss Score
8.96
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACACCAATTTTGTTTTGGGGAACGCCCAGATTGTGGACTGGCCGATCGTCTACAGTAATGACGGATTCTGCAAGCTGTCCGGTTACCATCGTGCTGAAGTCATGCAGAAGAGCAGCACATGCAG
Seq A exon
CTTCATGTACGGGGAACTTTCTGACAAAGAAACCAGTGAGAAACTCCGCCAGACCTTCGAGAACTACGAGATGAACTCCTTTGAGTTACTGATGTACAAGAAGAACC
Seq C2 exon
GGATGCCAGTGTGGTTCTTCGTCAAAATCGCTCCCATCCGAAACGAACAGGACAAAGTTGTGCTTTTCCTCTGCACCTTCAGCGACATCACTGCCTTCAAGCAGCCAATTGAAGACGACTCCTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023236-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(35.8=90.5)
A:
PF134261=PAS_9=FE(34.0=100)
C2:
PF134261=PAS_9=PD(29.2=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATTTTGTTTTGGGGAACGC
R:
AGTCGTCTTCAATTGGCTGCT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]