GgaEX6029343 @ galGal4
Exon Skipping
Gene
ENSGALG00000009877 | KCNH1
Description
potassium channel, voltage gated eag related subfamily H, member 1 [Source:HGNC Symbol;Acc:HGNC:6250]
Coordinates
chr3:21679620-21690275:+
Coord C1 exon
chr3:21679620-21679846
Coord A exon
chr3:21680093-21680199
Coord C2 exon
chr3:21690147-21690275
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTACTTTGTTTGCAGTTT
3' ss Score
7.42
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CGTGCAGGAATGGAAGCAATGTAGTTCAGATCCCAAAATGAGTATTTCCACTGATGCAACTGTAGTCTTGTCTGATGTCTAACTGATGTGTTCTTTCAAACAGATACTAATTTTGTCTTGGGCAATGCCCAGATAGTGGATTGGCCCATTGTGTACAGCAACGATGGATTTTGCAAGCTATCAGGATATCACAGAGCAGAAGTTATGCAAAAAAGCAGCACCTGCAG
Seq A exon
TTTTATGTATGGAGAGCTGACAGACAAAGATACAATTGACAAAGTCCGGCAGACATTTGAGAACTATGAGATGAATTCCTTTGAAATCCTGATGTACAAGAAGAACA
Seq C2 exon
GAACACCTGTCTGGTTCTTTGTGAAAATTGCTCCAATCCGAAATGAGCAGGATAAAGTGGTTTTATTTCTCTGCACTTTCAATGACATCACGGCTTTCAAGCAGCCCATTGAGGATGATTCATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009877-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(9.3=87.5)
A:
PF134261=PAS_9=FE(48.0=100)
C2:
PF134261=PAS_9=PD(41.3=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAGGAATGGAAGCAATG
R:
TTTTCACAAAGAACCAGACAGG
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]