BtaEX0018813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008710 | KCNH1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RefSeq peptide;Acc:NP_776797]
Coordinates
chr16:74136148-74160411:+
Coord C1 exon
chr16:74136148-74136271
Coord A exon
chr16:74140532-74140638
Coord C2 exon
chr16:74160283-74160411
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTGGTTGCTTTGCAGTTT
3' ss Score
7.88
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATACTAACTTTGTGTTGGGGAATGCCCAGATAGTGGACTGGCCTATCGTGTACAGCAATGATGGATTTTGCAAGCTGTCTGGCTATCACAGGGCGGAAGTGATGCAAAAAAGCAGTACATGCAG
Seq A exon
TTTTATGTATGGGGAGCTGACCGATAAAGATACCATTGAAAAAGTGCGGCAAACCTTTGAGAACTATGAGATGAATTCCTTTGAAATTCTGATGTACAAGAAGAACA
Seq C2 exon
GGACACCTGTGTGGTTCTTTGTGAAAATTGCTCCAATTCGAAACGAACAGGATAAAGTGGTTTTATTTCTTTGCACTTTCAGTGACATAACCGCTTTCAAACAGCCGATTGAAGATGATTCATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008710-'3-7,'3-1,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(35.8=90.5)
A:
PF134261=PAS_9=FE(34.0=100)
C2:
PF134261=PAS_9=PD(29.2=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTGTGTTGGGGAATGCC
R:
ACATGAATCATCTTCAATCGGCTGT
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development