GgaEX6029662 @ galGal3
Exon Skipping
Gene
ENSGALG00000010116 | DNAH8
Description
NA
Coordinates
chr3:30611014-30616641:-
Coord C1 exon
chr3:30616481-30616641
Coord A exon
chr3:30611958-30612114
Coord C2 exon
chr3:30611014-30611166
Length
157 bp
Sequences
Splice sites
3' ss Seq
CACGTTTCTTATCCTTGCAGATA
3' ss Score
11.53
5' ss Seq
GAGGCAAGC
5' ss Score
2.09
Exon sequences
Seq C1 exon
GTGTGGTTTAATGAAAAGATGTTTGACAGCGCTTTCTGTTTTTACACTGGATATAAAATTCCAGTGTGCAAAACCGTGGACCAGTATTTTGAATACATCCAGTCACTACCTGCTGTGGATAGCCCAAAGGTCTTTGGTCTCCATCCTAATGCTGATATTAC
Seq A exon
ATACCAAAGTAACACAGCAGCTGATGTTCTAGATACTATTACCAATATTCAGCCTAAAGAAAGTGGTGCAGGACCTGGAGAAACTCGTGAAGCAATTGTTTATCGTTTAGCTGAAGATATGCTAGAGAAACTTCCTCCGGATTATATACCTCATGAG
Seq C2 exon
GTAAAAGCTCGTTTAATTAAAATGGGACAACTCAACTCTATGAATATTTTTCTTCGACAAGAAATTGACAGAATGCAAAAAGTTATCACAGTAGTCCGCAACAGTTTGAATGATCTTAAATTAGCCATAGAAGGGACTATTATTATGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010116-'92-94,'92-93,93-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.6=100)
A:
PF0302810=Dynein_heavy=FE(7.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGACAGCGCTTTCTGTT
R:
AACTGTTGCGGACTACTGTGA
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]