MmuEX6076542 @ mm9
Exon Skipping
Gene
ENSMUSG00000033826 | Dnahc8
Description
dynein, axonemal, heavy chain 8 [Source:MGI Symbol;Acc:MGI:107714]
Coordinates
chr17:30977498-30991898:+
Coord C1 exon
chr17:30977498-30977658
Coord A exon
chr17:30988573-30988729
Coord C2 exon
chr17:30991746-30991898
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAGCCACTCTTTCCTGTCAGGTA
3' ss Score
8.78
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCTGGTTCAGTGAGAAGATGTTTGAGCCCTCGTTCTGTTTTTACACCGGCTACAAAATCCCCATATGCAAAACCCTGGACCAGTATTTTGAGTTCATCCAGTCTCTGCCATCCCTCGATAACCCAGAAGTCTTTGGGCTTCACCCCAATGCCGACATCAC
Seq A exon
GTATCAGAGTAACACAGCTTCCGACGTTCTTGAAACCATCACCAACATTCAACCGAAAGAGAGCGGTGGTGGTGTGGGCGAGACGCGCGAGGCCATTGTCTACAGGCTGTCTGAGGACATGCTCAGCAAGCTGCCCCCTAACTATGTGCCTCATGAG
Seq C2 exon
GTGAAAGCTCGCTTGATGAAGATGGGGCACCTGAACTCAATGAACATATTTCTTAGACAGGAAATTGACAGGATGCAGAAAGTCATCTCAATCCTCCGCAGCAGCCTGAGTGACCTAAAACTGGCTATCGAAGGGACGATCATCATGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033826-'92-90,'92-89,93-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.6=100)
A:
PF0302810=Dynein_heavy=FE(7.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGCTACAAAATCCCCAT
R:
TCGTCCCTTCGATAGCCAGTT
Band lengths:
256-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: