HsaEX6047006 @ hg19
Exon Skipping
Gene
ENSG00000124721 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:2952]
Coordinates
chr6:38957788-38980143:+
Coord C1 exon
chr6:38957788-38957948
Coord A exon
chr6:38976590-38976746
Coord C2 exon
chr6:38979991-38980143
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAGCTCACTCTTTTTACTAGGTA
3' ss Score
5.73
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTGGTTCAGTGAGAAGATGTTTGAACCGTCATTCTGCTTTTATACTGGATATAAAATCCCCTTATGCAAAACCTTAGACCAGTATTTTGAATACATCCAGTCACTGCCATCCCTAGATAACCCTGAAGTCTTTGGGCTTCACCCTAATGCTGATATCAC
Seq A exon
GTATCAGAGTAACACTGCTTCTGCTGTTCTTGAAACAATTACCAACATTCAACCCAAAGAGAGTGGAGGTGGTGTGGGAGAGACCCGGGAGGCTATTGTTTATAGATTATCTGAAGATATGCTGAGTAAACTCCCTCCTGATTACATTCCTCATGAG
Seq C2 exon
GTGAAATCTCGTTTGATAAAGATGGGCCATCTTAATTCAATGAACATATTTCTTAGACAAGAAATTGACAGAATGCAAAGAGTCATTTCAATACTCCGCAGTAGCCTGAGTGATCTAAAATTGGCCATTGAAGGAACAATCATTATGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124721-'91-93,'91-92,92-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.6=100)
A:
PF0302810=Dynein_heavy=FE(7.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGAACCGTCATTCTGCT
R:
CACTCAGGCTACTGCGGAGTA
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)