RnoEX0028602 @ rn6
Exon Skipping
Gene
ENSRNOG00000000542 | Dnah8
Description
dynein, axonemal, heavy chain 8 [Source:RGD Symbol;Acc:619986]
Coordinates
chr20:9525605-9541289:+
Coord C1 exon
chr20:9525605-9525765
Coord A exon
chr20:9537678-9537834
Coord C2 exon
chr20:9541137-9541289
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAGTCATAATTTCCTGTCAGGTA
3' ss Score
5.5
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTCTGGTTCAGTGAGAAGATGTTTGAGCCCTCGTTCTGTTTTTACACCGGCTATAAAATCCCCGTGTGCAAAACCTTGGACCAGTATTTTGAGTACATCCAGTCTCTGCCATCCCTAGATAACCCTGAAGTCTTTGGGCTCCACCCTAACGCTGACATCAC
Seq A exon
GTATCAGAGTAACACGGCTTCCGATGTTCTCGAAACCATCACTAACATCCAGCCGAAAGAGAGCGGCGGCGGCATGGGCGAGACTCGAGAGGCCATTGTCTACAGGCTGTCTGAGGACATGCTCAGCAAGCTGCCCCCTAACTATGTGGCTCATGAG
Seq C2 exon
GTGAAAGCCCGTTTGATGAAGATGGGACACCTTAATTCCATGAACATATTCCTTAGACAGGAGATCGACAGGATGCAGAGGGTCATCTCGCTCCTCCGGAATAGTCTGAATGACCTGAAGCTGGCTATCGAAGGAACAATCATCATGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000542-'132-142,'132-141,134-142
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.6=100)
A:
PF0302810=Dynein_heavy=FE(7.5=100)
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTATAAAATCCCCGTGT
R:
TCGATAGCCAGCTTCAGGTCA
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]