GgaEX6034395 @ galGal3
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
NA
Coordinates
chr4:38929145-38935225:+
Coord C1 exon
chr4:38929145-38929198
Coord A exon
chr4:38933986-38934039
Coord C2 exon
chr4:38935199-38935225
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTAATCTTTTCTTAGGGT
3' ss Score
8.3
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTGTAGATGGCCCAGTTGGTCCCCACGGCCCTGCAGGCCCTAAAGGAGACAGA
Seq A exon
GGTGAAAAGGGAACTGTAGGTGACCCTGGACCCAGAGGACCCTATGGCTTGCCT
Seq C2 exon
GGCAAAGATGGCAAGCCTGGCCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'30-33,'30-32,32-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.9=22.2),PF0139113=Collagen=FE(21.2=100)
A:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(11.8=44.4)
C2:
PF0139113=Collagen=FE(10.0=100),PF0139113=Collagen=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAGATGGCCCAGTTGGTC
R:
AAGGCCAGGCTTGCCATCTTT
Band lengths:
77-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]