GgaEX6034395 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37078938-37085020:+
Coord C1 exon
chr4:37078938-37078991
Coord A exon
chr4:37083781-37083834
Coord C2 exon
chr4:37084994-37085020
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTAATCTTTTCTTAGGGT
3' ss Score
8.3
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTGTAGATGGCCCAGTTGGTCCCCACGGCCCTGCAGGCCCTAAAGGAGACAGA
Seq A exon
GGTGAAAAGGGAACTGTAGGTGACCCTGGACCCAGAGGACCCTATGGCTTGCCT
Seq C2 exon
GGCAAAGATGGCGAGCCTGGCCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'37-36,'37-35,39-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.8=100)
A:
PF0139113=Collagen=FE(19.8=100),PF0139113=Collagen=PU(15.3=61.1)
C2:
PF0139113=Collagen=FE(9.3=100),PF0139113=Collagen=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTAGATGGCCCAGTTGGT
R:
GGCCAGGCTCGCCATCTT
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]