MmuEX6074085 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130280220-130287644:+
Coord C1 exon
chr3:130280220-130280273
Coord A exon
chr3:130286188-130286241
Coord C2 exon
chr3:130287618-130287644
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTTTTCATTTTAGGGA
3' ss Score
11.81
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGTGCAGATGGTCCTATAGGACCCCACGGCCCTGCAGGACCCAAAGGAGAAAGA
Seq A exon
GGAGAGAAAGGAGCTATGGGAGAGCCTGGACCCAGAGGGCCCTATGGGCTGCCT
Seq C2 exon
GGCAAAGATGGAGAACCTGGTCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'40-37,'40-36,41-37=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.2=5.6),PF0139113=Collagen=FE(28.3=100)
A:
PF0139113=Collagen=PD(25.0=83.3),PF0139113=Collagen=PU(25.0=94.4)
C2:
PF0139113=Collagen=FE(8.8=100),PF0139113=Collagen=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGATGGTCCTATAGGA
R:
GACCAGGTTCTCCATCTTTGCC
Band lengths:
76-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: