GgaEX6035324 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63223920-63224381:+
Coord C1 exon
chr4:63223920-63224079
Coord A exon
chr4:63224163-63224278
Coord C2 exon
chr4:63224367-63224381
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTGCATTTATTTATTGTCAGAAA
3' ss Score
4.46
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CCTGCAATTCTCGCACTTACGTGCATATGAATTTTCTGGGAGATGAACTCAATGTCACTTATACTAAAGGACACAGAGCTTGTCAGCAGGTTTGCACAGACATGATCCGCTGCCAATTTTTTACCTACTTTCCCCTCCAAGAGGCATGCAATGAGGAAAG
Seq A exon
AAAGTGTGAGTGTCATCTAAGAATGTCCTCAAATGGATCTCCAGTGGAAATACAACACGGTCCAGGAAGGATCTCTGGATACTCACTAAGACTATGTAAAAAAAAGGCCAGTACTG
Seq C2 exon
AATTGAAGATAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'7-9,'7-8,8-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.2=96.3)
A:
PF0002421=PAN_1=PD(37.6=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]