MmuEX0017718 @ mm9
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46332101-46335018:-
Coord C1 exon
chr8:46334859-46335018
Coord A exon
chr8:46333908-46334020
Coord C2 exon
chr8:46332101-46332260
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTACAGAGTTTTGTTTTCAGCCG
3' ss Score
2.97
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
Exon sequences
Seq C1 exon
CTTGTATCAGGGACATTTTCCCTAACACGGTGCTGGCAGACCTTAACATTGACAGCGTGGTGGCCCCAGATGCTTTTGTCTGTCGTCGCATCTGCACGCATCACCCCACTTGTTTGTTCTTCACATTCTTTTCCCAAGCATGGCCGAAAGAATCTCAGAG
Seq A exon
CCGCAGGGGCAGATGTTACCTAAAGCTTTCCTCCAATGGATCTCCAACGAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTGTGCAAAATGGATAATG
Seq C2 exon
TGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(38.4=84.6)
C2:
PF0008921=Trypsin=PU(19.3=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAGATGCTTTTGTCTGT
R:
GCTGCTGTCAGTATCCATTGGT
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: