MmuEX0017718 @ mm10
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:45246747-45248906:-
Coord C1 exon
chr8:45248744-45248906
Coord A exon
chr8:45248554-45248666
Coord C2 exon
chr8:45246747-45246906
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTACAGAGTTTTGTTTTCAGCCG
3' ss Score
2.97
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
Exon sequences
Seq C1 exon
TATTCTGCCATCCGTCCTTTTACAACGACACTGATTTCTTGGGAGAAGAGCTGGACATCGTCGATGTGAAAGGCCAAGAAACCTGTCAGAAAACGTGTACCAATAACGCCCGCTGCCAGTTCTTTACCTACTATCCATCGCACAGACTGTGCAATGAGAGGAA
Seq A exon
CCGCAGGGGCAGATGTTACCTAAAGCTTTCCTCCAATGGATCTCCAACGAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACTCACTGAGGCTGTGCAAAATGGATAATG
Seq C2 exon
TGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'14-13,'14-10,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(60.5=94.5)
A:
PF0002421=PAN_1=PD(38.4=84.6)
C2:
PF0008921=Trypsin=PU(19.3=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTCGATGTGAAAGGCCA
R:
GCTGCTGTCAGTATCCATTGGT
Band lengths:
253-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types