RnoEX0033743 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50195214-50197509:+
Coord C1 exon
chr16:50195214-50195323
Coord A exon
chr16:50195678-50195784
Coord C2 exon
chr16:50197304-50197509
Length
107 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGTTTTCAACCGCAGGGG
3' ss Score
8.69
5' ss Seq
ATGGCGAGT
5' ss Score
2.37
Exon sequences
Seq C1 exon
ACATCTTTGCCTCCTTAAAACATCTGAAAGCGGATTTCCAAGCACACGCATCACAAAGAGCAACGCCCTTTCCGGGTTCAGTCTCCAGCACTGCAGGCACAGCATCCCAG
Seq A exon
GGGCAGATGTTACTTAAAGCTTTCTTCAAACGGATCTCCAACTAGAATACTTCATGGGAGGGGAGGCATCTCTGGATACACGCTGAGGCTGTGCAAAATGGATAATG
Seq C2 exon
TATGCACAACCAAAATCAGGCCCAGGGTGTTCGGAGGAGCTGCGTCTGTTCACGGCGAGTGGCCATGGCAGGTGACCCTGCACACCACCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCGGTGGATATTGACAGCGGCTCATTGTTTCTCTGGGTTAGTATTAACGATATTCGCCTGGGGTCGTCATCACCAAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=81.6)
A:
PF0002421=PAN_1=PD(36.9=83.8)
C2:
PF0008921=Trypsin=PU(19.3=81.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAAAGAGCAACGCCCTTT
R:
ATGACGACCCCAGGCGAATAT
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]