GgaEX6039822 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10140019-10157784:+
Coord C1 exon
chr6:10140019-10140141
Coord A exon
chr6:10143593-10143674
Coord C2 exon
chr6:10157710-10157784
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCATTATGTTTTGTTGCAGACG
3' ss Score
7.6
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTGAGAGACACCAGCCAAGAGCCCTGTGGTCGATTATCGTTTTTGAAAGAACCAAAGACTACCAAAGGACTGCCACAAACAGCTGTTTGCAACTTGAATATCACTTTGCCAGCACACAAAAAG
Seq A exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
Seq C2 exon
GTCCACAAAGTCCATGTGAACGGACAGATATAAGGATGGCAATTGTAGCTGATCACCTTGGACTTAGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'43-48,'43-43,45-48=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.085 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(19.0=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGTGGTCGATTATCGT
R:
TGTCCAGCTAAGTCCAAGGTGA
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]