MmuEX0004932 @ mm9
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69443020-69451380:+
Coord C1 exon
chr10:69443020-69443142
Coord A exon
chr10:69444864-69444945
Coord C2 exon
chr10:69448831-69451380
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTCTTCTCTTTCAGGCT
3' ss Score
12.99
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATCAGAGACACCAGTCAAGAGCCCTGTGGCCGCCTGTCTTTCCTGAAGGAGCCAAAGACAACAAAGGGATTACCCCAAACAGCTGTTTGCAACTTAAATATTACTCTGCCGGCACATAAAAAG
Seq A exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
Seq C2 exon
AAACAGTTGAACGGAGTTCAGGAACAGCAAGATCCCTCCCCACCACTTATTCACACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACCACGGCTCCAATCACAGTGCCCGGGCCGGCCAAGTCAGGCTCCTTATCCAGCTCTCCCTCTAACACGCCGTCAGCTTCTCCGTTAAAATCCATATGGTCTGTCTCGACGCCTTCTCCGATCAAATCCACGTTAGGCGCCTCAACTACATCTTCAGTCAAATCCATTAGCGACGTGGCGTCTCCTATTAGATCTTTCCGGACAGTTTCTTCGCCAATAAAAACGGTGGTGTCGCCGTCTCCGTACAATCCCCAGGTTGCCTCTGGTACCCTTGGGAGGGTTCCCACCATCACAGAGGCCACACCCATAAAGGGGCTGGCTCCCAACTCAACTTTCTCCTCTCGAACTTCTCCTGTGACGACCGCAGGGTCTCTGTTGGAGAGGTCCTCCATCACCATGACACCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX2-2/4=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.083 C2=0.563
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000045834, ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000090090f5390A, ENSMUSP00000090090f5391A, ENSMUSP00000090090f5392A, ENSMUSP00000090090f5393A, ENSMUSP00000090090f5394A, ENSMUSP00000090090f6290A, ENSMUSP00000090090f6291A
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCAGTCAAGAGCCCTGT
R:
TGAATAAGTGGTGGGGAGGGA
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: