RnoEX0009376 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20429801-20436062:+
Coord C1 exon
chr20:20429801-20429923
Coord A exon
chr20:20431563-20431644
Coord C2 exon
chr20:20435695-20436062
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTTCCTTTTCAGGCT
3' ss Score
12.46
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTTAGAGACACCAGCCAAGAGCCCTGCGGCCGTCTGTCTTTCCTGAAGGAGCCGAAAACAACAAAAGGATTACCCCAAACGGCTGTTTGCAACTTAAATATTACTCTACCGGCGCATAAAAAG
Seq A exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTCACATCCCTAGCCTTACGTAAGCGCTACAGCTACTTGACTGAGCCCAGCATGA
Seq C2 exon
AAACAGTTGAACGGAGTTCAGGAACAGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACTACGACTCCACTCACAGTGCCCGGGCCGGCCAAATCAGGCTCCTTATCCAGCTCCCCCTCTAACACGCCGTCAGCGTCTCCGTTAAAATCCATATGGTCTGTTTCAACGCCTTCTCCGATCAAATCCACGCTAGGCGCCTCAACTACGTCATCAGTCAAATCCATTAGTGATGTGGCGTCTCCTATTAGATCTTTCCGGACAATTTCTTCGCCAATAAGAACGGTGCAAGATCCCTTCCCACTACTTATTCACACAAGCCATTCTTTTCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'70-75,'70-72,73-75
Average complexity
C2
Mappability confidence:
91%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.126 C2=0.335
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATTACCCCAAACGGCTG
R:
TGAGTGGAGTCGTAGTCCAGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]