GgaEX6039822 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8479698-8489728:+
Coord C1 exon
chr6:8479698-8479724
Coord A exon
chr6:8482682-8482763
Coord C2 exon
chr6:8487152-8489728
Length
82 bp
Sequences
Splice sites
3' ss Seq
AGCATTATGTTTTGTTGCAGACG
3' ss Score
7.6
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GAAACAGAGTCAGATCAAGATGATGAG
Seq A exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
Seq C2 exon
AAACAGTTGAACGGAGTGCAGGAGCAACAAGATCCCTACCTGCTACTTACTCATACAAGCCATTCTTTTCAACACGGCCATATCAGTCATGGACAACAGCTCCAATTACAGTGCCTGGGCAAACCAAATCAGGCTTCACTTCCTTATCAAGCTCTTCCTCTAACACTCCTACAGCTTCCCCATTAAAATCAATATGGTCTGTTTCTTCTACTTCTCCAATCAAATCCACATTAGGAGCTTCTACCACATCATCAGTTAAATCTGTTAGTGATGTAGCATCTCCGATTAGATCATTTCGGACAATCTCCTCACCAATAAAAACTGTGGTTTCGCAGCCTCCATACAATATGCAGGTTACTTCAGGTTCTTTCGTCAGAGCTCCCGCAGTAACAGAAGCTGCTAGCCTGAAAGGGCTGGCATCCACTACCACATTCCCCTCTCGGACATCTCCTGTGACTACAGCAGGGTCTCTCTTGGAGAGATCATCCATAACCATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'67-57,'67-54,69-57=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.357 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTCAGATCAAGATGATGAG
R:
AGGAAGTGAAGCCTGATTTGGT
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]