DreEX0013145 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7620912-7634354:-
Coord C1 exon
chr12:7634232-7634354
Coord A exon
chr12:7631318-7631399
Coord C2 exon
chr12:7620912-7620986
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTTGTTGTTACAGACT
3' ss Score
7.68
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTCAGAGACAACAGCCAAGAGCCATGCGGCCGCCTGTCCTTCCTCAGAGAGATCAAAACCTCCAAGGGTCTCGCACAAACTGCTATCTGTAATTTAAACATCACACTGCCAGGATTCAAGAAG
Seq A exon
ACTGAAAAGCCAGAACGACGTCATACCTTTGCATCTCTAGCCTTACGTAAGCGCTACAGCTATCTGACCGAGCCTGGAACGA
Seq C2 exon
GCCCTCAGACCCCCTGTGAAAGAACAGATTTGCGAATGGCTATTGTAGCAGATCATCTCGGCCTGAGTTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.362 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053117=Death=PU(18.1=57.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACAGCCAAGAGCCATG
R:
AGGCCGAGATGATCTGCTACA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]