DreEX0013144 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7631318-7634354:-
Coord C1 exon
chr12:7634232-7634354
Coord A exon
chr12:7633804-7633830
Coord C2 exon
chr12:7631318-7631399
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTGGGAACCAAAAGGAT
3' ss Score
-0.5
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTCAGAGACAACAGCCAAGAGCCATGCGGCCGCCTGTCCTTCCTCAGAGAGATCAAAACCTCCAAGGGTCTCGCACAAACTGCTATCTGTAATTTAAACATCACACTGCCAGGATTCAAGAAG
Seq A exon
GATGTGGATTCAGATCCCGAGGAAGAG
Seq C2 exon
ACTGAAAAGCCAGAACGACGTCATACCTTTGCATCTCTAGCCTTACGTAAGCGCTACAGCTATCTGACCGAGCCTGGAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=1.000 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCCTTCCTCAGAGAGA
R:
AGGTATGACGTCGTTCTGGCT
Band lengths:
120-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]