GgaEX0004067 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10140019-10143674:+
Coord C1 exon
chr6:10140019-10140141
Coord A exon
chr6:10140609-10140635
Coord C2 exon
chr6:10143593-10143674
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTTGGGACCAAAAGGAA
3' ss Score
-0.09
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGAGAGACACCAGCCAAGAGCCCTGTGGTCGATTATCGTTTTTGAAAGAACCAAAGACTACCAAAGGACTGCCACAAACAGCTGTTTGCAACTTGAATATCACTTTGCCAGCACACAAAAAG
Seq A exon
GAAACAGAGTCAGATCAAGATGATGAG
Seq C2 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=1.000 C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGACTACCAAAGGACTGC
R:
AAGGGAGACAAAGTTCTGACGC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]