BtaEX0003420 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15876797-15878545:-
Coord C1 exon
chr28:15878423-15878545
Coord A exon
chr28:15877946-15877972
Coord C2 exon
chr28:15876797-15876878
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTTGGGACCAAAAGGAG
3' ss Score
-1.15
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATAAGAGACACCAGCCAAGAGCCCTGTGGCCGTCTGTCTTTTCTGAAAGAACCAAAGACAACAAAAGGACTGCCTCAAACAGCTGTTTGCAACTTAAACATCACTCTGCCAGCACATAAAAAG
Seq A exon
GAGACAGAGTCAGATCAAGATGATGAG
Seq C2 exon
ACCGAGAAAACGGATAGACGACAGAGTTTTGCATCGTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=1.000 C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCCGTCTGTCTTTTCTG
R:
TCTGTCGTCTATCCGTTTTCTCG
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development