GgaEX0004067 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8479108-8482763:+
Coord C1 exon
chr6:8479108-8479230
Coord A exon
chr6:8479698-8479724
Coord C2 exon
chr6:8482682-8482763
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTTGGGACCAAAAGGAA
3' ss Score
-0.09
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGAGAGACACCAGCCAAGAGCCCTGTGGTCGATTATCGTTTTTGAAAGAACCAAAGACTACCAAAGGACTGCCACAAACAGCTGTTTGCAACTTGAATATCACTTTGCCAGCACACAAAAAG
Seq A exon
GAAACAGAGTCAGATCAAGATGATGAG
Seq C2 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=1.000 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGACTACCAAAGGACTGC
R:
AAGGGAGACAAAGTTCTGACGC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]