RnoEX0009385 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20429801-20431644:+
Coord C1 exon
chr20:20429801-20429923
Coord A exon
chr20:20430354-20430380
Coord C2 exon
chr20:20431563-20431644
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTTGGGACCAAAAGGAG
3' ss Score
-1.15
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTAGAGACACCAGCCAAGAGCCCTGCGGCCGTCTGTCTTTCCTGAAGGAGCCGAAAACAACAAAAGGATTACCCCAAACGGCTGTTTGCAACTTAAATATTACTCTACCGGCGCATAAAAAG
Seq A exon
GAGACAGAGTCAGATCAAGATGATGAG
Seq C2 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTCACATCCCTAGCCTTACGTAAGCGCTACAGCTACTTGACTGAGCCCAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=1.000 C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000079630fB1071
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTTCCTGAAGGAGCCGA
R:
GATGTGAAGCTCTGGCGTCTG
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]