GgaEX6039833 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10095575-10099282:+
Coord C1 exon
chr6:10095575-10095673
Coord A exon
chr6:10096047-10096142
Coord C2 exon
chr6:10099210-10099282
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTTTCAATTGCTAGAAT
3' ss Score
4.48
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
Seq A exon
AATGGAAACACTGCCCTCGCCATCGCGAAGCGACTTGGCTACATTTCAGTCGTTGACACATTGAAGGTGGTGACAGAGGAGACCATGACTACAATT
Seq C2 exon
ACTGTTACAGAAAAGCACAAAATGAATGTACCTGAAACCATGAATGAAGTTCTTGATATGTCCGACGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.012 C2=0.828
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACACCGCTGCACCAG
R:
CTTCATCGTCGGACATATCAAGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]