MmuEX0004921 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69898228-69904270:+
Coord C1 exon
chr10:69898228-69898326
Coord A exon
chr10:69898994-69899089
Coord C2 exon
chr10:69904198-69904270
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCACATTTCCCTGCTTCCAGAAT
3' ss Score
7.69
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AATGGATACACAGCACTGCACCAGGCTGCTCAGCAGGGCCACACGCATATCATCAATGTCTTGCTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq A exon
AATGGGAACACAGCTCTGGCCATCGCCCGGCGCCTTGGTTACATCTCGGTGGTTGACACACTGAAGGTCGTGACGGAGGAAATTATGACCACCACT
Seq C2 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGATATGTCAGACGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'54-65,'54-63,55-65
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.037 C2=0.960
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(50.8=100)
A:
PF127962=Ank_2=PD(41.3=81.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACACAGCACTGCACCAG
R:
TCATCGTCTGACATATCGAGGACT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types