HsaEX6088520 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60166824-60172998:-
Coord C1 exon
chr10:60172900-60172998
Coord A exon
chr10:60172308-60172403
Coord C2 exon
chr10:60166824-60166896
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACATTTTCCTTTTGCCAGAAT
3' ss Score
6.9
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq A exon
AATGGGAATACTGCCCTTGGCATTGCCCGGCGCCTCGGCTACATCTCAGTAGTGGACACCCTGAAGATAGTGACCGAAGAGACCATGACCACAACT
Seq C2 exon
ACTGTCACAGAGAAGCACAAAATGAATGTTCCAGAAACGATGAATGAAGTTCTTGATATGTCTGATGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'65-60,'65-56,69-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.211 C2=0.980
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTATACGCCATTACATCAAGC
R:
CATCATCAGACATATCAAGAACTTCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains