RnoEX0009366 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20352425-20358577:+
Coord C1 exon
chr20:20352425-20352523
Coord A exon
chr20:20353207-20353302
Coord C2 exon
chr20:20358505-20358577
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTACATTTCCCTGCTTCCAGAAT
3' ss Score
7.63
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AATGGATACACGCCACTGCACCAGGCAGCCCAGCAGGGCCACACACACATCATCAACGTCCTGCTCCAGAACAACGCTTCCCCCAATGAACTCACTGTG
Seq A exon
AATGGGAACACAGCCCTGGCCATCGCCCGACGCCTTGGCTACATCTCGGTGGTTGACACCCTAAAGGTCGTGACAGAGGAAATTATGACCACCACT
Seq C2 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGACATGTCAGACGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'35-41,'35-39,36-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.033 C2=0.987
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
PF127962=Ank_2=PD(38.7=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACACGCCACTGCACC
R:
TCATCGTCTGACATGTCGAGGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]