GgaEX6039833 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8434665-8438372:+
Coord C1 exon
chr6:8434665-8434763
Coord A exon
chr6:8435137-8435232
Coord C2 exon
chr6:8438300-8438372
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTTTCAATTGCTAGAAT
3' ss Score
4.48
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
Seq A exon
AATGGAAACACTGCCCTCGCCATCGCGAAGCGACTTGGCTACATTTCAGTCGTTGACACATTGAAGGTGGTGACAGAGGAGACCATGACTACAATT
Seq C2 exon
ACTGTTACAGAAAAGCACAAAATGAATGTACCTGAAACCATGAATGAAGTTCTTGATATGTCCGACGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'42-29,'42-28,44-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.031 C2=0.960
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACACCGCTGCACCAG
R:
CTTCATCGTCGGACATATCAAGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]