GgaEX6040752 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23810767-23817414:+
Coord C1 exon
chr6:23810767-23810984
Coord A exon
chr6:23816983-23817054
Coord C2 exon
chr6:23817343-23817414
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTTCTCTTCCCAGGGA
3' ss Score
11.95
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGGCGGTGCCGCCCGGCGCGGCCTCGACCTCCGGAGGGGCAGCGGGGGTCCCGGCGGCTCTGCGGGCCGCCGCCTGGCTCCTGGCGTTCGTCGCGCTGTGCCGGGGCCGCGCCGCAGCCTGCCCGCCGCTCTGCGCCTGCAGCGGCACCACGGTGGATTGCCACGGTACGGCCCTGCGAGCCGTGCCCAAGAGCATCCCCCGCGGCACCGAGCGCCT
Seq A exon
GGAGCTCAATGGCAACAACATCACACGTATCCACAAGAATGACTTCTCTGGACTGAAGCAGCTCCGTGTCCT
Seq C2 exon
GCAGCTGATGGAAAACCAGATCAGTGTGGTGGAGCGTGGTGCATTTGATGACATGAAGGAGCTGGAGCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=38.4),PF138551=LRR_8=PU(8.2=6.8)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCCTGGCGTTCGTC
R:
CACGCTCCACCACACTGATC
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]