MmuEX6032825 @ mm9
Exon Skipping
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41801560-41817982:-
Coord C1 exon
chr19:41817702-41817982
Coord A exon
chr19:41803545-41803616
Coord C2 exon
chr19:41801560-41801631
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCCTTTCTCTCCCAGGGA
3' ss Score
12.44
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GGATAGCACCTGGAGCTAGCCCCGGACGGGGATGGTCAGCGGCTGCGGCCGTCTGGCACGCGAACGGGACACGGCGAAGGCACCATGGCGCTAACGCCCCAGCGCGGGTCCTCTTCGGGGTTGAGCCGACCGGAGCTGTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGGGCCACGGCGTGCCCCGCCCTCTGCACCTGCACCGGCACTACGGTGGACTGCCACGGCACGGGTTTGCAGGCCATCCCCAAGAACATCCCACGGAACACCGAGCGCCT
Seq A exon
GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT
Seq C2 exon
GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=42.4),PF138551=LRR_8=PU(34.7=25.8)
A:
PF0056028=LRR_1=PD(78.3=72.0),PF138551=LRR_8=PU(9.1=20.0)
C2:
PF138551=LRR_8=PD(14.3=28.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCTGCTGCTGTGG
R:
AGCTCCGATCTGGTTCTCCAT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: