DreEX0073434 @ danRer10
Exon Skipping
Gene
ENSDARG00000099446 | slit1b
Description
slit homolog 1b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-4]
Coordinates
chr22:34943638-34961840:-
Coord C1 exon
chr22:34961455-34961840
Coord A exon
chr22:34944001-34944072
Coord C2 exon
chr22:34943638-34943709
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTATTATTTTTGAAGGGA
3' ss Score
7.17
5' ss Seq
TTTGTATGT
5' ss Score
2.51
Exon sequences
Seq C1 exon
AGAGCACATGTGTGGGAGATCCAGCCTCCCTCTCTCTCTCTCCCTCTCCTACACACATACACACAGCTTTACCCTGGAGAAGGGGAACCACGGCACAAAGAGCACACAAACACACACACACAGGACAGAGATCTCCTGCGTCCTCTCCTGTCCTGCAGTTTATGTGTGTCCCGCAGTATCCGCTGTGGGCTTTTGGAGATGCCGGACACCGAGCGCTCGCGTCCCAGCTCTGGACTGTGGATTTGGGCTCTGCTGCTGTCTCTGTTCCTCTCGGGACGCTCTGGAGCCTGTCCTCCTCACTGCTCCTGCACCGGATCCACTGTGGACTGCCATGGACTTGCCTTTAAAAGCGTCCCGCGAAACATCCCCAAAACCACGGAGCGCCT
Seq A exon
GGACTTGAATGCAAACAACCTCACGCACATTGGCAAGGATGACTTCGCTGGCCTGAAGCACCTCCGAATTTT
Seq C2 exon
GCACCTCATGGACAACCAGATCGTCTCCATTGACAGGGGAGCCTTCAGTGATCTGAAGGAGCTGGACAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099446-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=32.2),PF138551=LRR_8=PU(7.0=4.6)
A:
PF138551=LRR_8=FE(40.4=100)
C2:
PF138551=LRR_8=FE(40.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTGTTCCTCTCGGGAC
R:
ACTGAAGGCTCCCCTGTCAAT
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]